The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates
Identifieur interne : 002E73 ( Main/Exploration ); précédent : 002E72; suivant : 002E74The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates
Auteurs : Laurence Ettwiller [Royaume-Uni] ; Benedict Paten [Royaume-Uni] ; Marcel Souren [Allemagne] ; Felix Loosli [Allemagne] ; Jochen Wittbrodt [Allemagne] ; Ewan Birney [Royaume-Uni]Source :
- Genome Biology [ 1465-6906 ] ; 2005.
Descripteurs français
- KwdFr :
- Animaux, Délétion de séquence (génétique), Embryon non mammalien (cytologie), Humains, Reproductibilité des résultats, Régions promotrices (génétique) (génétique), Séquence conservée, Séquences d'acides nucléiques régulatrices (génétique), Takifugu (génétique), Technique SELEX, Transcription génétique (génétique), Transgènes, Vertébrés (génétique), Évolution moléculaire.
- MESH :
- cytologie : Embryon non mammalien.
- génétique : Délétion de séquence, Régions promotrices (génétique), Séquences d'acides nucléiques régulatrices, Takifugu, Transcription génétique, Vertébrés.
- Animaux, Humains, Reproductibilité des résultats, Séquence conservée, Technique SELEX, Transgènes, Évolution moléculaire.
English descriptors
- KwdEn :
- Animals, Conserved Sequence, Embryo, Nonmammalian (cytology), Evolution, Molecular, Humans, Promoter Regions, Genetic (genetics), Regulatory Sequences, Nucleic Acid (genetics), Reproducibility of Results, SELEX Aptamer Technique, Sequence Deletion (genetics), Takifugu (genetics), Transcription, Genetic (genetics), Transgenes, Vertebrates (genetics).
- MESH :
Abstract
Several new methods and a specific alignment tool for investigating transcriptional motifs in vertebrates were used to identify all possible 12mers involved in transcription. Active instances of these motifs were identified using comparative analysis across vertebrates.
Url:
DOI: 10.1186/gb-2005-6-12-r104
PubMed: 16356267
PubMed Central: 1414082
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000558
- to stream Pmc, to step Curation: 000558
- to stream Pmc, to step Checkpoint: 001426
- to stream PubMed, to step Corpus: 002293
- to stream PubMed, to step Curation: 002293
- to stream PubMed, to step Checkpoint: 002171
- to stream Ncbi, to step Merge: 000388
- to stream Ncbi, to step Curation: 000388
- to stream Ncbi, to step Checkpoint: 000388
- to stream Main, to step Merge: 002F03
- to stream Main, to step Curation: 002E73
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates</title><author><name sortKey="Ettwiller, Laurence" sort="Ettwiller, Laurence" uniqKey="Ettwiller L" first="Laurence" last="Ettwiller">Laurence Ettwiller</name><affiliation wicri:level="1"><nlm:aff id="I1">EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Paten, Benedict" sort="Paten, Benedict" uniqKey="Paten B" first="Benedict" last="Paten">Benedict Paten</name><affiliation wicri:level="1"><nlm:aff id="I1">EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Souren, Marcel" sort="Souren, Marcel" uniqKey="Souren M" first="Marcel" last="Souren">Marcel Souren</name><affiliation wicri:level="1"><nlm:aff id="I2">EMBL, Meyerhofstrasse, 69012 Heidelberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>EMBL, Meyerhofstrasse, 69012 Heidelberg</wicri:regionArea><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion></affiliation></author><author><name sortKey="Loosli, Felix" sort="Loosli, Felix" uniqKey="Loosli F" first="Felix" last="Loosli">Felix Loosli</name><affiliation wicri:level="1"><nlm:aff id="I2">EMBL, Meyerhofstrasse, 69012 Heidelberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>EMBL, Meyerhofstrasse, 69012 Heidelberg</wicri:regionArea><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion></affiliation></author><author><name sortKey="Wittbrodt, Jochen" sort="Wittbrodt, Jochen" uniqKey="Wittbrodt J" first="Jochen" last="Wittbrodt">Jochen Wittbrodt</name><affiliation wicri:level="1"><nlm:aff id="I2">EMBL, Meyerhofstrasse, 69012 Heidelberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>EMBL, Meyerhofstrasse, 69012 Heidelberg</wicri:regionArea><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion></affiliation></author><author><name sortKey="Birney, Ewan" sort="Birney, Ewan" uniqKey="Birney E" first="Ewan" last="Birney">Ewan Birney</name><affiliation wicri:level="1"><nlm:aff id="I1">EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">16356267</idno><idno type="pmc">1414082</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1414082</idno><idno type="RBID">PMC:1414082</idno><idno type="doi">10.1186/gb-2005-6-12-r104</idno><date when="2005">2005</date><idno type="wicri:Area/Pmc/Corpus">000558</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000558</idno><idno type="wicri:Area/Pmc/Curation">000558</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000558</idno><idno type="wicri:Area/Pmc/Checkpoint">001426</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">001426</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:16356267</idno><idno type="wicri:Area/PubMed/Corpus">002293</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002293</idno><idno type="wicri:Area/PubMed/Curation">002293</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002293</idno><idno type="wicri:Area/PubMed/Checkpoint">002171</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">002171</idno><idno type="wicri:Area/Ncbi/Merge">000388</idno><idno type="wicri:Area/Ncbi/Curation">000388</idno><idno type="wicri:Area/Ncbi/Checkpoint">000388</idno><idno type="wicri:doubleKey">1465-6906:2005:Ettwiller L:the:discovery:positioning</idno><idno type="wicri:Area/Main/Merge">002F03</idno><idno type="wicri:Area/Main/Curation">002E73</idno><idno type="wicri:Area/Main/Exploration">002E73</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates</title><author><name sortKey="Ettwiller, Laurence" sort="Ettwiller, Laurence" uniqKey="Ettwiller L" first="Laurence" last="Ettwiller">Laurence Ettwiller</name><affiliation wicri:level="1"><nlm:aff id="I1">EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Paten, Benedict" sort="Paten, Benedict" uniqKey="Paten B" first="Benedict" last="Paten">Benedict Paten</name><affiliation wicri:level="1"><nlm:aff id="I1">EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Souren, Marcel" sort="Souren, Marcel" uniqKey="Souren M" first="Marcel" last="Souren">Marcel Souren</name><affiliation wicri:level="1"><nlm:aff id="I2">EMBL, Meyerhofstrasse, 69012 Heidelberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>EMBL, Meyerhofstrasse, 69012 Heidelberg</wicri:regionArea><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion></affiliation></author><author><name sortKey="Loosli, Felix" sort="Loosli, Felix" uniqKey="Loosli F" first="Felix" last="Loosli">Felix Loosli</name><affiliation wicri:level="1"><nlm:aff id="I2">EMBL, Meyerhofstrasse, 69012 Heidelberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>EMBL, Meyerhofstrasse, 69012 Heidelberg</wicri:regionArea><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion></affiliation></author><author><name sortKey="Wittbrodt, Jochen" sort="Wittbrodt, Jochen" uniqKey="Wittbrodt J" first="Jochen" last="Wittbrodt">Jochen Wittbrodt</name><affiliation wicri:level="1"><nlm:aff id="I2">EMBL, Meyerhofstrasse, 69012 Heidelberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>EMBL, Meyerhofstrasse, 69012 Heidelberg</wicri:regionArea><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion><wicri:noRegion>69012 Heidelberg</wicri:noRegion></affiliation></author><author><name sortKey="Birney, Ewan" sort="Birney, Ewan" uniqKey="Birney E" first="Ewan" last="Birney">Ewan Birney</name><affiliation wicri:level="1"><nlm:aff id="I1">EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genome Biology</title><idno type="ISSN">1465-6906</idno><idno type="eISSN">1465-6914</idno><imprint><date when="2005">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Conserved Sequence</term><term>Embryo, Nonmammalian (cytology)</term><term>Evolution, Molecular</term><term>Humans</term><term>Promoter Regions, Genetic (genetics)</term><term>Regulatory Sequences, Nucleic Acid (genetics)</term><term>Reproducibility of Results</term><term>SELEX Aptamer Technique</term><term>Sequence Deletion (genetics)</term><term>Takifugu (genetics)</term><term>Transcription, Genetic (genetics)</term><term>Transgenes</term><term>Vertebrates (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Délétion de séquence (génétique)</term><term>Embryon non mammalien (cytologie)</term><term>Humains</term><term>Reproductibilité des résultats</term><term>Régions promotrices (génétique) (génétique)</term><term>Séquence conservée</term><term>Séquences d'acides nucléiques régulatrices (génétique)</term><term>Takifugu (génétique)</term><term>Technique SELEX</term><term>Transcription génétique (génétique)</term><term>Transgènes</term><term>Vertébrés (génétique)</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Embryon non mammalien</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Embryo, Nonmammalian</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Promoter Regions, Genetic</term><term>Regulatory Sequences, Nucleic Acid</term><term>Sequence Deletion</term><term>Takifugu</term><term>Transcription, Genetic</term><term>Vertebrates</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Délétion de séquence</term><term>Régions promotrices (génétique)</term><term>Séquences d'acides nucléiques régulatrices</term><term>Takifugu</term><term>Transcription génétique</term><term>Vertébrés</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Conserved Sequence</term><term>Evolution, Molecular</term><term>Humans</term><term>Reproducibility of Results</term><term>SELEX Aptamer Technique</term><term>Transgenes</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Humains</term><term>Reproductibilité des résultats</term><term>Séquence conservée</term><term>Technique SELEX</term><term>Transgènes</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Several new methods and a specific alignment tool for investigating transcriptional motifs in vertebrates were used to identify all possible 12mers involved in transcription. Active instances of these motifs were identified using comparative analysis across vertebrates.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Royaume-Uni</li></country></list><tree><country name="Royaume-Uni"><noRegion><name sortKey="Ettwiller, Laurence" sort="Ettwiller, Laurence" uniqKey="Ettwiller L" first="Laurence" last="Ettwiller">Laurence Ettwiller</name></noRegion><name sortKey="Birney, Ewan" sort="Birney, Ewan" uniqKey="Birney E" first="Ewan" last="Birney">Ewan Birney</name><name sortKey="Paten, Benedict" sort="Paten, Benedict" uniqKey="Paten B" first="Benedict" last="Paten">Benedict Paten</name></country><country name="Allemagne"><noRegion><name sortKey="Souren, Marcel" sort="Souren, Marcel" uniqKey="Souren M" first="Marcel" last="Souren">Marcel Souren</name></noRegion><name sortKey="Loosli, Felix" sort="Loosli, Felix" uniqKey="Loosli F" first="Felix" last="Loosli">Felix Loosli</name><name sortKey="Wittbrodt, Jochen" sort="Wittbrodt, Jochen" uniqKey="Wittbrodt J" first="Jochen" last="Wittbrodt">Jochen Wittbrodt</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002E73 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002E73 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= MersV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= PMC:1414082
|texte= The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:16356267" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a MersV1
| This area was generated with Dilib version V0.6.33. |  |